Publications
Publications of 2021
The works of 2021 by the lab's members during their time here, from their ORCID records, Crossref and Europe PMC.
41 publications5 preprintsLater: 2022Earlier: 2020All publications
202141 publications
Topic: Immunity and inflammation Benchmarking atlas-level data integration in single-cell genomics
SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis
Graph representation learning for single-cell biology
Vertical sleeve gastrectomy triggers fast β-cell recovery upon overt diabetes
scCODA is a Bayesian model for compositional single-cell data analysis
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies
Determinants of expression of SARS‐CoV‐2 entry‐related genes in upper and lower airways
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
A field guide to cultivating computational biology
Künstliche Intelligenz und maschinelles Lernen in der Diabetesforschung
Current Smoking Alters Gene Expression and DNA Methylation in the Nasal Epithelium of Patients with Asthma
Diet-induced alteration of intestinal stem cell function underlies obesity and prediabetes in mice
Aged alveolar epithelium contributes to inflammaging and reduced stem cell function in the lung
Chronic WNT/ß-catenin signaling impairs mitochondrial function in lung epithelial cells
Out-of-distribution prediction with disentangled representations for single-cell RNA sequencing data
EpiScanpy: integrated single-cell epigenomic analysis
Mapping single-cell data to reference atlases by transfer learning
Sfaira accelerates data and model reuse in single cell genomics
Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies
RNA velocity—current challenges and future perspectives
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’
AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution
CD81 marks immature and dedifferentiated pancreatic β-cells
Epithelial cell plasticity drives endoderm formation during gastrulation
Low numbers of cytokine transcripts drive inflammatory skin diseases by initiating amplification cascades in localized epidermal clusters
Machine learning for perturbational single-cell omics
Swarm Learning for decentralized and confidential clinical machine learning
Cellular connectomes as arbiters of local circuit models in the cerebral cortex
Comparison of genome-wide gene expression profiling by RNA Sequencing versus microarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: does it provide new insights?
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population
Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers
Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis
CD23 Levels on B Cells Determine Long-Term Therapeutic Response in Patients with Atopic Eczema Treated with Selective IgE Immune Apheresis
Posterior subcapsular cataracts are a late effect after acute exposure to 0.5 Gy ionizing radiation in mice
Single cell trajectory analysis of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors
Squidpy: a scalable framework for spatial single cell analysis
Deep learning the collisional cross sections of the peptide universe from a million experimental values
Deep Learning-based Propensity Scores for Confounding Control in Comparative Effectiveness Research
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation
Non-canonical Wnt/PCP signalling regulates intestinal stem cell lineage priming towards enteroendocrine and Paneth cell fates