Publications of 2014

201422 publications

1. Network-Based Approach for Analyzing Intra- and Interfluid Metabolite Associations in Human Blood, Urine, and Saliva

   Kieu Trinh Do, Gabi Kastenmüller, Dennis O. Mook-Kanamori, Noha A. Yousri, Fabian J. Theis, Karsten Suhre, Jan Krumsiek

   Journal of Proteome ResearchDOI
   Topic: Bulk omics and genetics

2. Proteome-wide analysis reveals an age-associated cellular phenotype of in situ aged human fibroblasts

   Daniel M. Waldera-Lupa, Faiza Kalfalah, Ana-Maria Florea, …, Fabian Theis, …, Kai Stuhler

   AgingOpen accessDOIPDF
   Topic: Bulk omics and genetics

3. Bayesian Blind Source Separation for Data with Network Structure

   Katrin Illner, Christiane Fuchs, Fabian J. Theis

   Journal of Computational BiologyOpen accessDOIPDF
   Topic: Component analysis and signal separation

4. RAMONA: a Web application for gene set analysis on multilevel omics data

   Steffen Sass, Florian Buettner, Nikola S. Mueller, Fabian J. Theis

   BioinformaticsOpen accessDOIPDF
   Topic: Open-source software

5. Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes

   Christiane Winkler, Jan Krumsiek, Florian Buettner, Christof Angermüller, Eleni Z. Giannopoulou, Fabian J. Theis, Anette-Gabriele Ziegler, Ezio Bonifacio

   DiabetologiaOpen accessDOIPDF
   Topic: Metabolism and diabetes

6. Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain

   M. Matthes, M. Preusse, J. Zhang, …, F. Theis, …, D. Trumbach

   DatabaseOpen accessDOIPDF
   Topic: Brain and mental health

7. Hypothalamic miR-103 Protects from Hyperphagic Obesity in Mice

   I. A. Vinnikov, K. Hajdukiewicz, J. Reymann, …, F. J. Theis, …, W. Konopka

   Journal of NeuroscienceOpen accessDOIPDF
   Topic: Metabolism and diabetes

8. Decoding the transcriptional program for blood development from whole tissue single-cell gene expression measurements

   Victoria Moignard, Steven Woodhouse, Laleh Haghverdi, …, Fabian Theis, …, Berthold Gottgens

   Experimental HematologyOpen accessDOI
   Topic: Single-cell genomics

9. Cytokine-regulated GADD45G induces differentiation and lineage selection in hematopoietic stem cells

   Frederic Thalheimer, Susanne Wingert, Pangrazio De Giacomo, …, Fabian Theis, …, Michael Rieger

   Experimental HematologyOpen accessDOI
   Topic: Cell fate and dynamics

10. Allergic Contact Dermatitis in Psoriasis Patients: Typical, Delayed, and Non-Interacting

    Maria Quaranta, Stefanie Eyerich, Bettina Knapp, …, Fabian J. Theis, …, Kilian Eyerich

    PLoS ONEOpen accessDOIPDF
    Topic: Immunity and inflammation

11. MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data

    Justin Feigelman, Fabian J Theis, Carsten Marr

    BMC BioinformaticsOpen accessDOIPDF
    Topic: Single-cell genomics

12. Intraindividual genome expression analysis reveals a specific molecular signature of psoriasis and eczema

    Maria Quaranta, Bettina Knapp, Natalie Garzorz, …, Fabian J. Theis, …, Kilian Eyerich

    Science Translational MedicineDOI
    Topic: Immunity and inflammation

13. ODE Constrained Mixture Modelling: A Method for Unraveling Subpopulation Structures and Dynamics

    Jan Hasenauer, Christine Hasenauer, Tim Hucho, Fabian J. Theis

    PLoS Computational BiologyOpen accessDOIPDF
    Topic: Mechanistic modelling

14. Cytokine-Regulated GADD45G Induces Differentiation and Lineage Selection in Hematopoietic Stem Cells

    Frederic B. Thalheimer, Susanne Wingert, Pangrazio De Giacomo, …, Fabian J. Theis, …, Michael A. Rieger

    Stem Cell ReportsOpen accessDOIPDF
    Topic: Cell fate and dynamics

15. Novel genetic associations with serum level metabolites identified by phenotype set enrichment analyses

    Janina S. Ried, So-Youn Shin, Jan Krumsiek, …, Fabian J. Theis, …, Christian Gieger

    Human Molecular GeneticsOpen accessDOIPDF
    Topic: Bulk omics and genetics

16. An atlas of genetic influences on human blood metabolites

    The Multiple Tissue Human Expression Resource (MuTHER) Consortium, So-Youn Shin, Eric B Fauman, …, Fabian J Theis, …, Nicole Soranzo

    Nature GeneticsOpen accessDOIPDF
    Topic: Bulk omics and genetics

17. Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data

    Florian Buettner, Victoria Moignard, Berthold Göttgens, Fabian J. Theis

    BioinformaticsOpen accessDOIPDF
    Topic: Single-cell genomics

18. miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm

    Dapeng Yang, Dominik Lutter, Ingo Burtscher, Lena Uetzmann, Fabian J. Theis, Heiko Lickert

    DevelopmentDOIPDF
    Topic: Cell fate and dynamics

19. Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles

    Sameer S. Bajikar, Christiane Fuchs, Andreas Roller, Fabian J. Theis, Kevin A. Janes

    Proceedings of the National Academy of SciencesOpen accessDOIPDF
    Topic: Statistical inference

20. Posttranscriptional Regulatory Networks: From Expression Profiling to Integrative Analysis of mRNA and MicroRNA Data

    Swanhild U. Meyer, Katharina Stoecker, Steffen Sass, Fabian J. Theis, Michael W. Pfaffl

    Methods in Molecular BiologyBook chapterDOI
    Topic: Gene regulation

21. Centroid Clustering of Cellular Lineage Trees

    Valeriy Khakhutskyy, Michael Schwarzfischer, Nina Hubig, Claudia Plant, Carsten Marr, Michael A. Rieger, Timm Schroeder, Fabian J. Theis

    Lecture Notes in Computer ScienceBook chapterOpen accessDOI
    Topic: Cell fate and dynamics

22. Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More

    Fabian Fröhlich, Fabian J. Theis, Jan Hasenauer

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Statistical inference