Publications of 2011

201120 publications

1. The Sox17‐mCherry fusion mouse line allows visualization of endoderm and vascular endothelial development

   Ingo Burtscher, Wenke Barkey, Michael Schwarzfischer, Fabian J. Theis, Heiko Lickert

   genesisDOI
   Topic: Cell fate and dynamics

2. PhenomiR: MicroRNAs in Human Diseases and Biological Processes

   Andreas Ruepp, Andreas Kowarsch, Fabian Theis

   Methods in Molecular BiologyBook chapterDOI
   Topic: Open-source software

3. An Ensemble Approach for Inferring Semi-quantitative Regulatory Dynamics for the Differentiation of Mouse Embryonic Stem Cells Using Prior Knowledge

   Dominik Lutter, Philipp Bruns, Fabian J. Theis

   Advances in Experimental Medicine and BiologyBook chapterOpen accessDOI
   Topic: Cell fate and dynamics

4. The Nature and Perception of Fluctuations in Human Musical Rhythms

   Holger Hennig, Ragnar Fleischmann, Anneke Fredebohm, York Hagmayer, Jan Nagler, Annette Witt, Fabian J. Theis, Theo Geisel

   PLoS ONEOpen accessDOIPDF

5. Modularity Maximization and Tree Clustering: Novel Ways to Determine Effective Geographic Borders

   D. Grady, R. Brune, C. Thiemann, F. Theis, D. Brockmann

   Springer Optimization and Its ApplicationsBook chapterOpen accessDOI
   Topic: Networks and graphs

6. Uniqueness of Non-Gaussianity-Based Dimension Reduction

   Fabian J. Theis, Motoaki Kawanabe, Klaus-Robert Muller

   IEEE Transactions on Signal ProcessingDOI
   Topic: Component analysis and signal separation

7. MicroRNAs coordinately regulate protein complexes

   Steffen Sass, Sabine Dietmann, Ulrike C Burk, …, Fabian J Theis, Yu Wang

   BMC Systems BiologyOpen accessDOIPDF
   Topic: Gene regulation

8. Discovery of Sexual Dimorphisms in Metabolic and Genetic Biomarkers

   Kirstin Mittelstrass, Janina S. Ried, Zhonghao Yu, …, Fabian J. Theis, …, Thomas Illig

   PLoS GeneticsOpen accessDOIPDF
   Topic: Bulk omics and genetics

9. Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network

   Jan Krumsiek, Carsten Marr, Timm Schroeder, Fabian J. Theis

   PLoS ONEOpen accessDOIPDF
   Topic: Cell fate and dynamics

10. Steady‐state robustness of qualitative gene regulation networks

    C. Breindl, S. Waldherr, D. M. Wittmann, F. J. Theis, F. Allgöwer

    International Journal of Robust and Nonlinear ControlDOI
    Topic: Gene regulation

11. Gaussian graphical modeling reveals specific lipid correlations in glioblastoma cells

    Nikola S. Mueller, Jan Krumsiek, Fabian J. Theis, Christian Böhm, Anke Meyer-Bäse

    SPIE ProceedingsConference paperDOI
    Topic: Statistical inference

12. Vertex centralities in input-output networks reveal the structure of modern economies

    Florian Blöchl, Fabian J. Theis, Fernando Vega-Redondo, Eric O’N. Fisher

    Physical Review EDOIPDF
    Topic: Networks and graphs

13. Moderne Informations- und Kommunikationstechnologie in der Rehabilitation

    H. Kordy, F. Theis, M. Wolf

    Bundesgesundheitsblatt - Gesundheitsforschung - GesundheitsschutzDOI
    Topic: Clinical and cohort data

14. The Heckscher–Ohlin model and the network structure of international trade

    Thushyanthan Baskaran, Florian Blöchl, Tilman Brück, Fabian J. Theis

    International Review of Economics & FinanceDOI
    Topic: Networks and graphs

15. Complex Principal Component and Correlation Structure of 16 Yeast Genomic Variables

    F. J. Theis, N. Latif, P. Wong, D. Frishman

    Molecular Biology and EvolutionOpen accessDOI
    Topic: Component analysis and signal separation

16. miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs

    Andreas Kowarsch, Martin Preusse, Carsten Marr, Fabian J. Theis

    RNAOpen accessDOIPDF
    Topic: Gene regulation

17. Huge Splicing Frequency in Human Y Chromosomal UTY Gene

    Ingeborg Laaser, Fabian J. Theis, Martin Hrabé de Angelis, Hans-Jochem Kolb, Jerzy Adamski

    OMICS: A Journal of Integrative BiologyOpen accessDOI
    Topic: Gene regulation

18. Dynamic Mathematical Modeling of IL13-Induced Signaling in Hodgkin and Primary Mediastinal B-Cell Lymphoma Allows Prediction of Therapeutic Targets

    Valentina Raia, Marcel Schilling, Martin Böhm, …, Fabian Theis, …, Ursula Klingmüller

    Cancer ResearchDOIPDF
    Topic: Mechanistic modelling

19. Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data

    Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski, Fabian J Theis

    BMC Systems BiologyOpen accessDOIPDF
    Topic: Metabolism and diabetes

20. Dynamic regimes of random fuzzy logic networks

    Dominik M Wittmann, Fabian J Theis

    New Journal of PhysicsOpen accessDOI
    Topic: Networks and graphs