Publications of 2010

201024 publications

1. Effective Parameters Determining the Information Flow in Hierarchical Biological Systems

   Florian Blöchl, Dominik M. Wittmann, Fabian J. Theis

   Bulletin of Mathematical BiologyDOI
   Topic: Mechanistic modelling

2. Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation

   Andreas Kowarsch, Florian Blöchl, Sebastian Bohl, Maria Saile, Norbert Gretz, Ursula Klingmüller, Fabian J Theis

   BMC BioinformaticsOpen accessDOIPDF
   Topic: Component analysis and signal separation

3. MIPS: curated databases and comprehensive secondary data resources in 2010

   H. Werner Mewes, Andreas Ruepp, Fabian Theis, …, Alexey Antonov

   Nucleic Acids ResearchOpen accessDOIPDF
   Topic: Open-source software

4. The Structure of Borders in a Small World

   Christian Thiemann, Fabian Theis, Daniel Grady, Rafael Brune, Dirk Brockmann

   PLoS ONEOpen accessDOIPDF
   Topic: Networks and graphs

5. MicroRNA Loss Enhances Learning and Memory in Mice

   Witold Konopka, Anna Kiryk, Martin Novak, …, Fabian J. Theis, …, Günther Schütz

   The Journal of NeuroscienceOpen accessDOIPDF
   Topic: Brain and mental health

6. Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs

   Mara L Hartsperger, Florian Blöchl, Volker Stümpflen, Fabian J Theis

   BMC BioinformaticsOpen accessDOIPDF
   Topic: Networks and graphs

7. Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks

   Dominik M. Wittmann, Carsten Marr, Fabian J. Theis

   Journal of Theoretical BiologyOpen accessDOI
   Topic: Networks and graphs

8. Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli

   Carsten Marr, Fabian J. Theis, Larry S. Liebovitch, Marc-Thorsten Hütt

   PLoS Computational BiologyOpen accessDOIPDF
   Topic: Gene regulation

9. Colored Subspace Analysis: Dimension Reduction Based on a Signal's Autocorrelation Structure

   Fabian J Theis

   IEEE Transactions on Circuits and Systems I: Regular PapersDOI
   Topic: Component analysis and signal separation

10. Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways

    Andreas Kowarsch, Carsten Marr, Daniel Schmidl, Andreas Ruepp, Fabian J. Theis

    PLoS ONEOpen accessDOIPDF
    Topic: Gene regulation

11. Theoretical Analysis of Time-to-Peak Responses in Biological Reaction Networks

    Fabian J. Theis, Sebastian Bohl, Ursula Klingmüller

    Bulletin of Mathematical BiologyOpen accessDOI
    Topic: Mechanistic modelling

12. Odefy - From discrete to continuous models

    Jan Krumsiek, Sebastian Pölsterl, Dominik M Wittmann, Fabian J Theis

    BMC BioinformaticsOpen accessDOIPDF
    Topic: Mechanistic modelling

13. The a d coefficient as a descriptive measure of the within‐group agreement of ratings

    Ludwig Kreuzpointner, Patricia Simon, Fabian J. Theis

    British Journal of Mathematical and Statistical PsychologyOpen accessDOIPDF
    Topic: Statistical inference

14. PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

    Andreas Ruepp, Andreas Kowarsch, Daniel Schmidl, …, Fabian J Theis

    Genome BiologyOpen accessDOIPDF
    Topic: Open-source software

15. Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops of the Tryptophan Regulatory Network of Escherichia coli

    A. Meyer-Baese, F. Theis, M. R. Emmett

    Advances in Experimental Medicine and BiologyBook chapterDOI
    Topic: Mechanistic modelling

16. The 2010 Signal Separation Evaluation Campaign (SiSEC2010): Audio Source Separation

    Shoko Araki, Alexey Ozerov, Vikrham Gowreesunker, Hiroshi Sawada, Fabian Theis, Guido Nolte, Dominik Lutter, Ngoc Q. K. Duong

    Lecture Notes in Computer ScienceBook chapterOpen accessDOI
    Topic: Component analysis and signal separation

17. The 2010 Signal Separation Evaluation Campaign (SiSEC2010): Biomedical Source Separation

    Shoko Araki, Fabian Theis, Guido Nolte, Dominik Lutter, Alexey Ozerov, Vikrham Gowreesunker, Hiroshi Sawada, Ngoc Q. K. Duong

    Lecture Notes in Computer ScienceBook chapterOpen accessDOI
    Topic: Component analysis and signal separation

18. Information-Theoretic Model Selection for Independent Components

    Claudia Plant, Fabian J. Theis, Anke Meyer-Baese, Christian Böhm

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

19. Second Order Subspace Analysis and Simple Decompositions

    Harold W. Gutch, Takanori Maehara, Fabian J. Theis

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

20. Second-Order Source Separation Based on Prior Knowledge Realized in a Graph Model

    Florian Blöchl, Andreas Kowarsch, Fabian J. Theis

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

21. Robust Second-Order Source Separation Identifies Experimental Responses in Biomedical Imaging

    Fabian J. Theis, Nikola S. Müller, Claudia Plant, Christian Böhm

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

22. ICA over Finite Fields

    Harold W. Gutch, Peter Gruber, Fabian J. Theis

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

23. Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects

    Dominik Lutter, Carsten Marr, Jan Krumsiek, Elmar W Lang, Fabian J Theis

    BMC GenomicsOpen accessDOIPDF
    Topic: Gene regulation

24. From Binary to Multivalued to Continuous Models: The lac Operon as a Case Study

    Raimo Franke, Fabian J. Theis, Steffen Klamt

    Journal of Integrative BioinformaticsOtherDOI
    Topic: Mechanistic modelling