Publications of 2009

200912 publications

1. Spatial Analysis of Expression Patterns Predicts Genetic Interactions at the Mid-Hindbrain Boundary

   Dominik M. Wittmann, Florian Blöchl, Dietrich Trümbach, Wolfgang Wurst, Nilima Prakash, Fabian J. Theis

   PLoS Computational BiologyOpen accessDOIPDF
   Topic: Mechanistic modelling

2. Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

   Dominik M Wittmann, Jan Krumsiek, Julio Saez-Rodriguez, Douglas A Lauffenburger, Steffen Klamt, Fabian J Theis

   BMC Systems BiologyOpen accessDOIPDF
   Topic: Mechanistic modelling

3. Reconstruction of graphs based on random walks

   Dominik M. Wittmann, Daniel Schmidl, Florian Blöchl, Fabian J. Theis

   Theoretical Computer ScienceOpen accessDOI
   Topic: Networks and graphs

4. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine

   Katharine J Webb, William HJ Norton, Dietrich Trümbach, …, Fabian J Theis, …, Laure Bally-Cuif

   Genome BiologyOpen accessDOIPDF
   Topic: Brain and mental health

5. ICA, kernel methods and nonnegativity: New paradigms for dynamical component analysis of fMRI data

   Peter Gruber, Anke Meyer-Bäse, Simon Foo, Fabian J. Theis

   Engineering Applications of Artificial IntelligenceDOI
   Topic: Component analysis and signal separation

6. Hypergraphs and Cellular Networks

   Steffen Klamt, Utz-Uwe Haus, Fabian Theis

   PLoS Computational BiologyOpen accessDOIPDF
   Topic: Networks and graphs

7. Blind Source Separation Techniques for the Decomposition of Multiply Labeled Fluorescence Images

   Richard A. Neher, Mišo Mitkovski, Frank Kirchhoff, Erwin Neher, Fabian J. Theis, André Zeug

   Biophysical JournalOpen accessDOIPDF
   Topic: Imaging

8. Blind Source Separation Techniques For The Decomposition Of Multiply Labeled Fluorescence Images

   Richard A. Neher, Mišo Mitkovski, Frank Kirchhoff, Erwin Neher, Fabian J. Theis, André Zeug

   Biophysical JournalOpen accessDOI
   Topic: Component analysis and signal separation

9. Hierarchical Extraction of Independent Subspaces of Unknown Dimensions

   Peter Gruber, Harold W. Gutch, Fabian J. Theis

   Lecture Notes in Computer ScienceBook chapterDOI
   Topic: Component analysis and signal separation

10. Soft Dimension Reduction for ICA by Joint Diagonalization on the Stiefel Manifold

    Fabian J. Theis, Thomas P. Cason, P. -A. Absil

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Component analysis and signal separation

11. Estimating Hidden Influences in Metabolic and Gene Regulatory Networks

    Florian Blöchl, Fabian J. Theis

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Networks and graphs

12. Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data

    Fabian J. Theis, Richard Neher, Andre Zeug

    Lecture Notes in Computer ScienceBook chapterDOI
    Topic: Imaging