Plate VI · News
New papers, tools and news, as posted by @fabian_theis. Replies and reposts are left out.
Making good figures for journal submissions is crucial, and often decides in big parts about success of a manuscript. I tried to find some good howtos for new PhD students, and like this one from @NPRougier a lot: dx.plos.org/10.1371/journa… @PLOSCompBiol. Any other good primers?
Got my 'soon to be historic' (@bschoelkopf words) #ellis mug today - great to see Europe moving towards a joint #AI strategy. ellis.eu
'Spatial transcriptomics coming of age' - great short summary on seqFISH+ and Slide-seq by Darren Burgess @NatureRevGenet. Looking forward to many spatial single cell atlases. rdcu.be/bw9g4
View on X: post of 16 Apr 2019This is an exciting opportunity to setup, coordinate and manage the Helmholtz #AI unit - let us know if you are interested!
View on X: post of 12 Apr 2019HAICU @helmholtz_ai wants you for setting up and managing the HAICU central unit: We are looking for an operations director, scientific managers and an administrative assistant. bit.ly/2IopmFI @HelmholtzMucEn @helmholtz_en
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True, here you go: rdcu.be/bvNef
View on X: post of 11 Apr 2019@fabian_theis @gokcen @Avsecz @gagneurlab too bad it's behind a paywall. Put the PDF on your website and tweet the direct link instead
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Sorry, here it is rdcu.be/bvNef
View on X: post of 11 Apr 2019@fabian_theis @gokcen @Avsecz @gagneurlab You article seems interesting, can you please provide a public preprint so people can actually read it?
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Here‘s the freely accessible readcube link for the review: rdcu.be/bvNef
View on X: post of 11 Apr 2019@fabian_theis @gokcen @Avsecz @gagneurlab could you upload the preprint / final manuscript to researchgate? I cannot access the article :-(
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Thank you, @EricTopol, this is truly very kind!
View on X: post of 10 Apr 2019The interpretation of genome data is quickly being transformed by #deeplearning #AI. And this is the best review on it yet, just out today nature.com/articles/s4157… @NatureRevGenet @fabian_theis @gokcen @avsecz @gagneurlab
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Welcome to twitter, John (+lab)! Gotta love the scatterplot picture. it's so CURLY!
View on X: post of 10 Apr 2019It's alive! The (John) Marioni Lab has officially joined twitter. Follow us to keep up-to-date with going's on in the single cell world.
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Always love this sight. Good running along the river, too.
View on X: post of 10 Apr 2019Last leg of my east coast tour. Charles river looking serene
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Our review on #DeepLearning for Genomics is finally out - lot's of paper-digging led by @gokcen and @avsecz from @gagneurlab. Targeted at biologists who want to learn how 'AI' can be used for genomic modeling, from motif discovery to single cell genomics. nature.com/articles/s4157…
First meeting of the new @helmholtz_ai partners - lots of tasks to discuss in order to setup such a network 😅 haicu.de
Had a great day listening and talking to an impressive young crowd of applicants - data science literacy is most definitely catching on. Looking forward to an entertaining second #MUDS recruiting day!
View on X: post of 8 Apr 2019Kicking off our Munich School for Data Science with the 1st recruiting event. Looking forward to the #MUDS class of 2019. @HelmholtzMucEn @TU_Muenchen @LMU_Muenchen @DLR_en @PlasmaphysikIPP #MUDSinterviewdays #DataScience #PhD
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@GilesYeo on our duty as scientists to stand up for, and talk about, the truth. Truly inspiring and so funny talk! Will try to work on my science communication.
@HelmholtzMucEn’s new CTO, Kerstin Günther, presenting at our townhall meeting today. Coming from Telekom, her vision is a truly professional data center - we need this in science, too!
Congratulations again, Prof. Simon! Single cell genomics & clinics sounds like an exciting mixture.
View on X: post of 2 Apr 2019Transitioned from old to new job officially today. Big thx to @ICBmunich and esp @fabian_theis for an amazing time in Munich! View from my old office shows Allianz Arena in the distance (will miss this). Yet, really excited about my new role @UTHealth_SBMI in Houston!
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Not sure about the joy of ‘Fahrvergnügen’ (maybe they wanted a subtitle with Umlaut), but glad to see that ‘Germany is becoming a career destination for many researchers’!
View on X: post of 1 Apr 2019Ten reasons to move to Germany as a researcher nature.com/articles/d4158…
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Beyond pseudotime - really glad that our 'pseudodynamics' paper for modeling #scRNAseq time-series is finally out. Huge effort led by @davidsebfischer and Anna from @JanHasenauer lab in collab with @MaehrLab and @LickertHeiko group. rdcu.be/bue7J
View on X: post of 1 Apr 2019Pseudodynamics: Helmholtz Munich scientists develop new #MachineLearning model to describe dynamics of cell development and to simulate the cell's destiny @NatureBiotech @fabian_theis bit.ly/2FObVwZ; go.nature.com/2FIfEuK
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Looking forward to this cooperation! Wonder if we should wrap up each #HAICU talk with a haiku poem, though.
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Congrats, Alfonso!
View on X: post of 30 Mar 2019Proud to have received an @ERC_Research award in the UK, which makes the most grantees in this year’s awards, thus showing how much the UK & Europe have to lose from a bad resolution of the current situation #IAmEuropean #NoBrexit
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On the value of preprints for young PIs - cannot agree more. #PLOSBiology dx.plos.org/10.1371/journa…
View on X: post of 29 Mar 2019U.S.E.- United States of Europe: the answer to this Brexit mess. youtu.be/afaQ4GSNZMg
View on X: post of 28 Mar 2019Thanks Lucas - yes, practically next doors plus there’s a bunch of excellent ML and bio researchers at Zurich 😀
View on X: post of 27 Mar 2019@fabian_theis @HelmholtzMucEn Congratulations Fabian. We really should talk about building an alliance with the Zurich area through @LogicofLife_CH 😀 We’re practically neighbors 👍
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Deeply honored and excited to setup the new flagship unit for applied #AI @HelmholtzMucEn - convinced that together we can build impactful AI applications on Helmholtz data. See bit.ly/2TWhW3i and haicu.de
View on X: post of 27 Mar 2019Shiver...
View on X: post of 27 Mar 2019Can #AI be judge in Court? The Estonian Ministry of justice thinks so and commissioned a Robo-judge. wired.com/story/can-ai-b… #Estonia #Law #ArtificialIntelligence
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Man, we had quite a few laughs about this one. For me it rhymes with numpy, so yeah .. a bit of a stretch. But an Italian colleague assured me that they prefer the scampi rhyme. At least we have an animal, right? 🦐
View on X: post of 27 Mar 2019@fabian_theis Wait, is scanpy supposed to rhyme with "scampi" or "numpy"? Have I been pronouncing it wrong all this time!?
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😂
View on X: post of 27 Mar 2019@fabian_theis I like that this reply still works even without the original tweet. Although now it reads as though a chunk of Helmholtz will be working on getting that original tweet back up and running
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