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Research · Topic

Single-cell genomics

Measuring the molecules of individual cells, such as their RNA, to tell cell types and states apart.

3 people5 publications12 toolsAlso called single-cell, scrna-seq, single-cell-rna-seq

Research themes

1

People

2

Alumni

1

Software

12

  • scVelo

    RNA velocity generalized through dynamical modeling.

    515v0.3.49 mo agoPython

  • scArches

    Reference mapping for single-cell genomics.

    414v0.5.13 y agoJupyter Notebook

  • Scanpy

    Single-cell analysis in Python. Scales to >100M cells.

    2.6K1.12.58 d agoPython

  • anndata

    Annotated data.

    7830.13.449 d agoPython

  • zellkonverter

    Conversion between scRNA-seq objects

    209v1.22.06 mo agoR

  • scCODA

    A Bayesian model for compositional single-cell data analysis

    205v0.1.94 y agoJupyter Notebook

  • chemCPA

    Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

    162Jupyter Notebook

  • anndata2ri

    Convert between AnnData and SingleCellExperiment

    154v2.0.14 mo agoPython

  • DRVI

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    83v0.2.823 d agoPython

  • scib-reproducibility

    Additional code and analysis from the single-cell integration benchmarking project

    76Jupyter Notebook

  • trVAE

    Conditional out-of-distribution prediction

    63v1.1.26 y agoPython

On the map

5

Plate II

Pl. II The map of publications (Plate II) with the 5 works tagged single-cell genomics drawn large in the colour of their island.

5 of 742 works marked · data synced 6 Nov 2026

Publications

5

  1. Independent Component, Graph
  2. Spatial, Omics Data
  3. Cell Atlas, Integration
  4. Single Cell RNA, Gene Expression
  5. Single Cell RNA, Gene Expression

News

1