Plate V.4 · Software

Scanpy

Single-cell analysis in Python. Scales to >100M cells.

scverse/scanpyPythonBSD-3-Clause

Health

Latest release: 1.12.5, 29 Oct 2026 (8 days ago)
CI: Passing
Open issues: 535
Last push: 5 Nov 2026
Created: 29 Jan 2017
Language: Python
Licence: BSD-3-Clause

Releases

1.12.529 October 2026
1.12.427 August 2026
1.12.324 July 2026
1.12.229 June 2026
1.12.110 April 2026
1.12.023 January 2026

Publication1

SCANPY: large-scale single-cell gene expression data analysis
F. Alexander Wolf, Philipp Angerer, Fabian J. Theis
Genome Biology2018Open accessDOI PDF