Software

Squidpy

Spatial Single Cell Analysis in Python

scverse/squidpyPythonBSD-3-ClauseFeatured

Health

Latest release: v1.8.4, 29 Oct 2026 (9 days ago)
CI: Passing
Open issues: 108
Last push: 6 Nov 2026
Created: 21 Aug 2020
Language: Python
Licence: BSD-3-Clause

Releases

v1.8.429 October 2026
v1.8.329 June 2026
v1.8.219 June 2026
v1.8.19 February 2026
v1.8.03 February 2026
v1.7.06 December 2025

Publication1

Squidpy: a scalable framework for spatial omics analysis
Giovanni Palla, Hannah Spitzer, Michal Klein, …, Fabian J. Theis
Nature Methods2022Open accessDOI PDF