Software

CellRank

CellRank: dynamics from multi-view single-cell data

scverse/cellrankPythonBSD-3-ClauseFeatured

Health

Latest release: v2.3.3, 16 Sep 2026 (52 days ago)
CI: Failing
Open issues: 5
Last push: 4 Nov 2026
Created: 12 Mar 2020
Language: Python
Licence: BSD-3-Clause

Releases

v2.3.316 September 2026
v2.3.224 June 2026
v2.3.19 June 2026
v2.3.05 June 2026
v2.2.09 March 2026
v2.1.023 February 2026

Publications3

CellRank for directed single-cell fate mapping
Marius Lange, Volker Bergen, Michal Klein, …, Fabian J. Theis
Nature Methods2022Open accessDOI PDF
CellRank 2: unified fate mapping in multiview single-cell data
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe’er, Fabian Theis
Nature Methods2024Open accessDOI PDF
CellRank: consistent and data view agnostic fate mapping for single-cell genomics
Philipp Weiler, Fabian J. Theis
Nature Protocols2026ReviewDOI